http://baoilleach.blogspot.com/2008/05/rss-feeds-for-chemistry-projects-on.htmlbaoilleach's RSS feed of Chemistry projects on SourceForgeThu, 24 Jul 2008 00:06:04 GMTPyRSS2Gen-1.0.0http://blogs.law.harvard.edu/tech/rsshttp://sf.net/projects/lajolla/LaJolla aims to build an index structure for the mining of structural similarities of thousands of proteins.http://sf.net/projects/lajolla/Sun, 15 Jun 2008 00:00:00 GMThttp://sf.net/projects/iupinymd/PINY_MD(c) is a multipurpose, object-oriented molecular simulation package.http://sf.net/projects/iupinymd/Tue, 10 Jun 2008 00:00:00 GMThttp://sf.net/projects/jacuda/this is a small project which provides several mathematical function useful for a chemist or somebody working with mass specs. The goal is to provide several cuda and c based functions which can be easily accessed using java, groovy and python.http://sf.net/projects/jacuda/Sat, 07 Jun 2008 00:00:00 GMThttp://sf.net/projects/codonanalysissy/This application transcribes basic codons and tells you the amino acid it codes for, the tRNA anti-Codon, and give you a 3D structural model of the amino acid and 2D picture of its chemical structure. Analysis reports can then be printed by the user.http://sf.net/projects/codonanalysissy/Fri, 06 Jun 2008 00:00:00 GMThttp://sf.net/projects/moleculator/Command line molar mass calculator that provides typo checking and options for printing elemental analysis and saving a record of previously calculated molar masses.http://sf.net/projects/moleculator/Thu, 29 May 2008 00:00:00 GMThttp://sf.net/projects/pdbeditobyjl/User friendly PDB (Protein Data Bank) file editor with graphic user interface Tool for protein crystallographers to expedite selective edit / data extraction / analysis of their PDB fileshttp://sf.net/projects/pdbeditobyjl/Wed, 28 May 2008 00:00:00 GMThttp://sf.net/projects/pdbeditorjl/User friendly PDB (Protein Data Bank) file editor with graphic user interface for protein crystallographers to expedite selective parallel edit / data extraction / analysis of their PDB fileshttp://sf.net/projects/pdbeditorjl/Fri, 23 May 2008 00:00:00 GMThttp://sf.net/projects/openthermo/This program calculates thermodynamic functions from molecular data. It allows to take into account internal rotations (from free rotation approximation to point-to-point input of potential energy curve), and allows to make simple anharmonic corrections.http://sf.net/projects/openthermo/Wed, 21 May 2008 00:00:00 GMThttp://sf.net/projects/xyztool/It is a commandline tool to manipulate .xyz molecule files.http://sf.net/projects/xyztool/Fri, 16 May 2008 00:00:00 GMThttp://sf.net/projects/noemol/Noemol is a graphical program for calculation of multi-spin nuclear Overhauser effects (nOes) in nuclear magnetic resonance (NMR) spectroscopy, it is a valuable tool for scientists involved in structural biology and chemistry.http://sf.net/projects/noemol/Tue, 13 May 2008 00:00:00 GMThttp://sf.net/projects/pyitc/pyitc is designed for processing and analysing isothermal titration calorimetry experimental data (Microcal instruments).http://sf.net/projects/pyitc/Tue, 13 May 2008 00:00:00 GMThttp://sf.net/projects/alsp/The aim of the project is to provide open source collection of algorithms in the field of spectroscopy: data handling and processing, modeling and artificial intelligence tools.http://sf.net/projects/alsp/Sun, 11 May 2008 00:00:00 GMThttp://sf.net/projects/jpowder/Jpowder is a Java viewer of powder diffraction data.http://sf.net/projects/jpowder/Sat, 10 May 2008 00:00:00 GMThttp://sf.net/projects/wyckconf/wyckconf is a tool to generate crystal structure configurations from Wyckoff coordinate input, and to regenerate symmetries in the resulting structures of molecular dynamics calculations.http://sf.net/projects/wyckconf/Thu, 08 May 2008 00:00:00 GMThttp://sf.net/projects/mdxcs/C# port of Scott Northrup's MacroDox software (originally in Fortran 77) that calculates atomic processes associated with protein analysis.http://sf.net/projects/mdxcs/Mon, 05 May 2008 00:00:00 GMThttp://sf.net/projects/enum/A Fortran 95 implementation of an algorithm for generating derivative structures of a parent lattice. The algorithm is discussed in detail in: Gus L. W. Hart and Rodney Forcade, "A new approach to generating derivative structures," Phys. Rev B. (2008).http://sf.net/projects/enum/Thu, 01 May 2008 00:00:00 GMThttp://sf.net/projects/apmo/Any Particle Molecular Orbital (APMO) has been created in order to study nuclear quantum effects. The current version of the APMO code is an implementation of the nuclear orbital and molecular orbital approaches (NMO) at the Hartree-Fock level of theory.http://sf.net/projects/apmo/Mon, 28 Apr 2008 00:00:00 GMThttp://sf.net/projects/chemicalc/Chemical Calculator that can calculate various aspects of compounds. The programs main features are: * Get information about an element * Calculate the amount of moles of an element * Calculate the Empirical and Molecular formulas of a compoundhttp://sf.net/projects/chemicalc/Sun, 27 Apr 2008 00:00:00 GMThttp://sf.net/projects/chemdb/The ChemiSQL project intends to federate several open source chemical cartridge projects (Mychem, Orchem and Pgchem). The project provides documentation, examples and an unified graphical user interface for using these chemical cartridge.http://sf.net/projects/chemdb/Fri, 25 Apr 2008 00:00:00 GMThttp://sf.net/projects/imd/iMD: interactive/intuitive MD (Molecular Dynamics) simulation analysis.http://sf.net/projects/imd/Wed, 23 Apr 2008 00:00:00 GMThttp://sf.net/projects/arve/The Atmosphere-Regolith-Vegetation (ARVE) project has the goal of creating, maintaining and distributing a state-of-the-art Dynamic Global Vegetation Model (ARVE-DGVM) for investigating the role of the Earth's land surface in the climate system.http://sf.net/projects/arve/Tue, 22 Apr 2008 00:00:00 GMThttp://sf.net/projects/lsg/LSG is a Windows application framework designed for visual data integration and based on Microsoft .NET 2.0 and CAB. An admin utility manages LSG apps, modules, events, and services, and a client integrates the modules and provides functionality hooks.http://sf.net/projects/lsg/Mon, 21 Apr 2008 00:00:00 GMThttp://sf.net/projects/suiterna/The RNA Ontology Consortium proposed a translation the RNA backbone angles to 46 clusters ('suites') and hence unique names. This project calculates the suites from RNA 3D structures, and to search on a Java-based index structure of known folds.http://sf.net/projects/suiterna/Tue, 15 Apr 2008 00:00:00 GMThttp://sf.net/projects/lr3/A software package for superposition of binding sites, clustering for common amino acids in this binding sites and a search algorithm to screen novel proteins for the occurrence of such a binding site on the surface.http://sf.net/projects/lr3/Mon, 14 Apr 2008 00:00:00 GMThttp://sf.net/projects/sunlightdpd/SunlightDPD provides a home for open source codes related to the dissipative particle dynamics (DPD) simulation method.http://sf.net/projects/sunlightdpd/Mon, 14 Apr 2008 00:00:00 GMThttp://sf.net/projects/pyspec/The pySpec project is a set of data analysis routines written in python for analysis of x-ray diffraction data produced by the SPEC X-Ray Diffraction and Data Acquisition software.http://sf.net/projects/pyspec/Sun, 13 Apr 2008 00:00:00 GMThttp://sf.net/projects/jbonzer/Jamberoo (former JMolEditor) is a library of algorithms for structural Computational Chemistry implemented in the Java programming language. The Jamberoo classes can be integrated into other Java applications.http://sf.net/projects/jbonzer/Thu, 10 Apr 2008 00:00:00 GMThttp://sf.net/projects/silico/A perl molecular toolkit designed to assist in general molecular modelling activities. Silico provides file format conversion, molecular manipulation and analysis and a simple way to write wrapper scripts around other preexisting software packages.http://sf.net/projects/silico/Thu, 27 Mar 2008 00:00:00 GMThttp://sf.net/projects/vrml97import/The VRML97-Import-Script is a Python-Script, that extends the capabilities of Blender to import VRML97-Files. It supports Blender since version 2.42.http://sf.net/projects/vrml97import/Sat, 22 Mar 2008 00:00:00 GMThttp://sf.net/projects/labmatica/Labmatica FreeLIMS - this project has moved: http://sourceforge.net/projects/freelims more on www.labmatica.comhttp://sf.net/projects/labmatica/Tue, 18 Mar 2008 00:00:00 GMThttp://sf.net/projects/mtdsim/Software package for stochastic and hybrid simulation of microtubule dynamics and the effects of anti-mitotic drugs and microtubule regulatory proteins.http://sf.net/projects/mtdsim/Wed, 12 Mar 2008 00:00:00 GMThttp://sf.net/projects/bmrbpublic/A place for software feedback and selected source code posting for the web based NMR database, BioMagResBank.http://sf.net/projects/bmrbpublic/Mon, 10 Mar 2008 00:00:00 GMThttp://sf.net/projects/spcview/The software "SPCView" is used for XRF qualitative analysis of various substances with "SPECTROSCAN MAKC" spectrometers.http://sf.net/projects/spcview/Fri, 07 Mar 2008 00:00:00 GMThttp://sf.net/projects/opt/TestPC created a microbenchmark to test the performance of Java operations on different platforms. TestPC can be used to guide optimization decisions and to compare different Java implementations.http://sf.net/projects/opt/Fri, 07 Mar 2008 00:00:00 GMThttp://sf.net/projects/macbarley/MacBarley is a Macintosh application that allows a home brewer to formulate beer recipes and calculate bitterness, gravity, alcohol, color etc. It is written in Cocoa (Objective C) and is compatible with Mac OS 10.5 or later.http://sf.net/projects/macbarley/Tue, 04 Mar 2008 00:00:00 GMThttp://sf.net/projects/molproc/The program fuses 2 sets of molecules. It tries different relative positions of molecules before binding them, so that there is no or minimal intersection in the resulting molecule. The atom to be fused in a molecule is labeled with an R symbol.http://sf.net/projects/molproc/Mon, 03 Mar 2008 00:00:00 GMThttp://sf.net/projects/crystalnav/Web application to browse, search and display crystal data and their properties by way of a query builderhttp://sf.net/projects/crystalnav/Fri, 29 Feb 2008 00:00:00 GMThttp://sf.net/projects/molwind/The Molwind project aims at developing Open Source software to visualize relationships among molecular entities such as chemical structures on the basis of NASA WorldWind. Different levels of complexity get visible by zooming in areas of interest.http://sf.net/projects/molwind/Fri, 29 Feb 2008 00:00:00 GMThttp://sf.net/projects/smdm/Web application written in Java to manage scientific studies and categorize datasetshttp://sf.net/projects/smdm/Thu, 28 Feb 2008 00:00:00 GMThttp://sf.net/projects/zodiac-zeden/Zodiac is a Molecular Modelling suite for drug design. Its features include support for haptic devices and nintendo wiimote fully undoable command list, MMFF94 implementation, POVRAY output.http://sf.net/projects/zodiac-zeden/Thu, 28 Feb 2008 00:00:00 GMThttp://sf.net/projects/jgamess/A set of utilities for working with the GAMESS Computational packages. Written in java to maximize cross platform usehttp://sf.net/projects/jgamess/Thu, 21 Feb 2008 00:00:00 GMThttp://sf.net/projects/chemsharp/This project was inspired existing cheminformatics APIs such as the CDK, Marvin, and Frowns. The goal of the project is to produce a full featured cheminfo api for the .Net framework. Early stage dev will focus on data structures and classes for file io.http://sf.net/projects/chemsharp/Thu, 21 Feb 2008 00:00:00 GMThttp://sf.net/projects/binbase/BinBase is a software for the automatic analysis of Massspec data from LECO GC-Tofs.http://sf.net/projects/binbase/Wed, 13 Feb 2008 00:00:00 GMThttp://sf.net/projects/pascual/PAScual is a data analysis suite for Positron Annihilation Lifetime Spectroscopy (PALS).http://sf.net/projects/pascual/Tue, 12 Feb 2008 00:00:00 GMThttp://sf.net/projects/airstate/Moist air state using psychrometric relationships. This program is an on-line interactive calculator that solves the thermodynamic equations with the least repetition.http://sf.net/projects/airstate/Sun, 10 Feb 2008 00:00:00 GMThttp://sf.net/projects/fpocket/Fpocket is the first open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level.http://sf.net/projects/fpocket/Sat, 09 Feb 2008 00:00:00 GMThttp://sf.net/projects/orechem/ORE-CHEM is an open source implementation of software for managing online chemical repositories and services using the Object Reuse and Exchange specification. For more information on ORE, see http://www.openarchives.org/ore/.http://sf.net/projects/orechem/Fri, 08 Feb 2008 00:00:00 GMThttp://sf.net/projects/crystaleye/CrystalEye is a repository system for collecting Crystallographic dadta anbd processing it so that it can be usefully browsed, searched and harvested.http://sf.net/projects/crystaleye/Fri, 08 Feb 2008 00:00:00 GMThttp://sf.net/projects/opencubman/Open-source Cube Files Manipulator Program (OpenCubMan)is a tool for computational chemists interested in performing operations on files with volumetric data representing wavefunctions or electron densities (often called cube files).http://sf.net/projects/opencubman/Fri, 08 Feb 2008 00:00:00 GMThttp://sf.net/projects/moleculizer/Moleculizer is a tool for simulating and generating biochemical reaction networks that are specified through a set of rules for protein-protein interactions.http://sf.net/projects/moleculizer/Wed, 06 Feb 2008 00:00:00 GMThttp://sf.net/projects/tdmolvis/3DMolvis is a tool designed to make easy learning of basic structure and function of biological molecules.http://sf.net/projects/tdmolvis/Tue, 05 Feb 2008 00:00:00 GMThttp://sf.net/projects/kintab/Tabulation of combustion kinetic data based on Cantera. Cantera results are tabulated and if a enough points are accumulated in a local region, the gradient is tabulated.http://sf.net/projects/kintab/Wed, 30 Jan 2008 00:00:00 GMThttp://sf.net/projects/biohack/An open source, free DIY biotech/biohacking bootstrapping kit. Genetic engineering/therapy, BioBricks, synthetic biology - schematics, tutorials, etc.http://sf.net/projects/biohack/Wed, 30 Jan 2008 00:00:00 GMThttp://sf.net/projects/nmreserve/A web-based reservation system to schedule NMR usage.http://sf.net/projects/nmreserve/Fri, 25 Jan 2008 00:00:00 GMThttp://sf.net/projects/peparml/PepArML: An unsupervised, model-free, combining peptide identification arbiter for tandem mass spectra via machine learning.http://sf.net/projects/peparml/Fri, 25 Jan 2008 00:00:00 GMThttp://sf.net/projects/stochfit/StochFit utilizes stochastic fitting methods to model specular x-ray reflectivity or neutron reflectivity data. It provides an easy to use graphical user interface for both model dependent and model independent methods.http://sf.net/projects/stochfit/Mon, 21 Jan 2008 00:00:00 GMThttp://sf.net/projects/react/A system for symbolic chemical database for analysis and generation. The main use is to generation the information necessary for a oxidative combustion mechanism to be used in programs for combustion mechanisms.http://sf.net/projects/react/Thu, 17 Jan 2008 00:00:00 GMThttp://sf.net/projects/spglib/Spglib is a C library to search symmetry of crystal. See wiki page, http://spglib.wiki.sourceforge.net/ .http://sf.net/projects/spglib/Wed, 16 Jan 2008 00:00:00 GMThttp://sf.net/projects/chemvisio/ChemVisio is software which might be useful for educational purposes (non-organic chemistry, crystallography etc.). It might be a good visualization support for all people who need better illustrations than that you could see in books.http://sf.net/projects/chemvisio/Fri, 11 Jan 2008 00:00:00 GMThttp://sf.net/projects/nose-project/NOSE is a package for simulation of linear and non-linear optical and infrared spectra, including absorption, fluorescence, circular dichroism, pump-probe, photon echo and other.http://sf.net/projects/nose-project/Fri, 04 Jan 2008 00:00:00 GMThttp://sf.net/projects/fuprolan/Visual FUPROLAN (Futured Programming language )Is a programming language for programming in multiple paradigms, such procedural programming, object-oriented programming, and generic programming. But which is characterized by a clear syntax, rigorous andhttp://sf.net/projects/fuprolan/Fri, 04 Jan 2008 00:00:00 GMThttp://sf.net/projects/wachabe/Open Source Laboratory Information Management System. Enabling the gathering / storing of analytical data within an SQL database.http://sf.net/projects/wachabe/Mon, 10 Dec 2007 00:00:00 GMThttp://sf.net/projects/complexnetwork/This is a experimental C++ library for those people who concern about complex network, especially for nonlinear chemists.http://sf.net/projects/complexnetwork/Mon, 10 Dec 2007 00:00:00 GMThttp://sf.net/projects/metware/Databases to aid Metabolomics projects providing storage functionality for raw and preprocessed data, and integration with existing data analysis environments.http://sf.net/projects/metware/Mon, 19 Nov 2007 00:00:00 GMThttp://sf.net/projects/rainier/RAINIER: Rapid Automated Inference of Nucleic-Acid Interaction Energy using Refinement RAINIER is a protein simulator that can predict the interface structure of DNA- and RNA-binding proteins, using statistical and physical techniques.http://sf.net/projects/rainier/Mon, 19 Nov 2007 00:00:00 GMThttp://sf.net/projects/chestrucon/Collection of scripts converting structure data files into different formats (e.g. CTRL to POSCAR).http://sf.net/projects/chestrucon/Mon, 12 Nov 2007 00:00:00 GMThttp://sf.net/projects/scanedit/Program for viewing, editing, manipulating, and analyzing spectral data. Advanced functions include fitting spectra as LC of standard basis spectra, singular value decomposition, Fourier transform, global fitting of 3D titration and kinetic data.http://sf.net/projects/scanedit/Tue, 30 Oct 2007 00:00:00 GMThttp://sf.net/projects/nlopredict/NLOPredict is a nonlinear optical prediction and data analysis tool. Nonlinear optical measurements can yield information about the orientation of molecules at surfaces and interfaces.http://sf.net/projects/nlopredict/Fri, 26 Oct 2007 00:00:00 GMThttp://sf.net/projects/autoshim/Tools to build molecular-docking activity prediction models by PLS regression with iterative training and pose-selection. Descriptors include (i) docking score(s), (ii) pharmacophore features, (iii) multi-feature descriptors learned by decision trees.http://sf.net/projects/autoshim/Wed, 24 Oct 2007 00:00:00 GMThttp://sf.net/projects/st-a-c/STrategy for Aligned Crystals (STAC) - A java framework to facilitate the use of Kappa Goniometers and to support multiple sweep crystallographic diffraction data collections.http://sf.net/projects/st-a-c/Wed, 24 Oct 2007 00:00:00 GMThttp://sf.net/projects/pistoia/An initiative to streamline non-competitive elements of the pharmaceutical drug discovery workflow (chemistry, biological screening, logistics) by the specification of common business terms, relationships and processes.http://sf.net/projects/pistoia/Mon, 22 Oct 2007 00:00:00 GMThttp://sf.net/projects/ollints/This project going to develop a thermodinamical server for chemical simulation, equip design, scientific module for other aplication or chemical education. Also the thermo server is developed to complete the project of chemical simulation Sim42.Spanishhttp://sf.net/projects/ollints/Tue, 02 Oct 2007 00:00:00 GMThttp://sf.net/projects/networkeditor/PNE provides an environment for modeling, simulating, and optimizing biological networks including regulatory and metabolic networks.http://sf.net/projects/networkeditor/Thu, 27 Sep 2007 00:00:00 GMThttp://sf.net/projects/ising/This is a multithreaded C program for calculations, measures and visualizations on Ising model systems.http://sf.net/projects/ising/Mon, 24 Sep 2007 00:00:00 GMThttp://sf.net/projects/qmforge/QMForge reads output from various quantum mechanical calculations and provides tools for analyzing these results. Specifically, population (Mulliken and C-squared), fragment, and charge decomposition analyses are available. See the webpage for more infohttp://sf.net/projects/qmforge/Thu, 13 Sep 2007 00:00:00 GMThttp://sf.net/projects/crystalbuilder/An easy way for single crystal structure analysis. Graphical software for single crystal structure refinement. CRYSTALBUILDER uses SHELXL-97 software for the refinement and makes directly possible the molecular structure visualization.http://sf.net/projects/crystalbuilder/Tue, 11 Sep 2007 00:00:00 GMThttp://sf.net/projects/opentox/The objective of the OpenTox project is to develop a predictive toxicology framework, that provides an unified access to toxicity data, (Q)SAR models and validation procedures.http://sf.net/projects/opentox/Mon, 10 Sep 2007 00:00:00 GMThttp://sf.net/projects/freelims/Labmatica FreeLIMSŪ is a Laboratory Information Management System ( LIMS ) written in JAVA! Manage samples; create sample types from methods & parameters; easily generate reports & certificates; fine tune user rights; more on: www.labmatica.comhttp://sf.net/projects/freelims/Fri, 07 Sep 2007 00:00:00 GMThttp://sf.net/projects/steps/Stochastic simulator for signaling pathways occuring in biological cells. Handles reaction-diffusion processes in 3D tetrahedral meshes.http://sf.net/projects/steps/Thu, 06 Sep 2007 00:00:00 GMThttp://sf.net/projects/amorss/This project is A Mitochondrial OxydoReduction Simulation System. It consists of two linked projects: a program for displaying and analysing large biomolecular systems (Floral) and a multi-agent simulator for biomolecular oxydoreduction systems (AMORSS).http://sf.net/projects/amorss/Thu, 06 Sep 2007 00:00:00 GMThttp://sf.net/projects/taris/TARIS (Tree Analysis and Representation of Isopotential Surfaces) is a software package designed for molecular similarity purposes in the field of Computational Chemistry. Users are allowed to compare molecules through their MEP loading .cube files.http://sf.net/projects/taris/Wed, 29 Aug 2007 00:00:00 GMThttp://sf.net/projects/plasmakin/PLASMAKIN is a package to handle physical and chemical data used in plasma physics modeling and to compute gas-phase and gas-surface kinetics data: particle production and loss rates, photon emission spectra and energy exchange rates.http://sf.net/projects/plasmakin/Tue, 28 Aug 2007 00:00:00 GMThttp://sf.net/projects/strigi-chemical/Bio- chemical meta data extraction, indexing and search for desktop search engine Strigihttp://sf.net/projects/strigi-chemical/Thu, 23 Aug 2007 00:00:00 GMThttp://sf.net/projects/starx/STAR/CIF processing libraries and related tools.http://sf.net/projects/starx/Wed, 22 Aug 2007 00:00:00 GMThttp://sf.net/projects/osra/OSRA is a utility designed to convert graphical representations of chemical structures, as they appear in journal articles, patent documents, textbooks, trade magazines etc., into SMILES - a computer recognizable molecular structure format.http://sf.net/projects/osra/Tue, 21 Aug 2007 00:00:00 GMThttp://sf.net/projects/olex2/Olex2 is visualisation software for small-molecule crystallography developed at Durham University/EPSRC. It provides comprehensive tools for crystallographic model manipulation for the end user and an extensible development framework for programmers.http://sf.net/projects/olex2/Fri, 10 Aug 2007 00:00:00 GMThttp://sf.net/projects/jmoloko/Chemical Equations with Cowshttp://sf.net/projects/jmoloko/Thu, 09 Aug 2007 00:00:00 GMThttp://sf.net/projects/killarney/Free wastewater treatment plant simulator and modelling environmenthttp://sf.net/projects/killarney/Tue, 07 Aug 2007 00:00:00 GMThttp://sf.net/projects/nacmos/The program NAcMoS (Nucleic Acid Modeling System) is a software package that leads to a natural classification of RNAs represented as weighted graphs.http://sf.net/projects/nacmos/Sat, 04 Aug 2007 00:00:00 GMThttp://sf.net/projects/mito-mas-m/Mito-MAS-m is a simulator of the mitochondrial inner membrane and the enzymatic complexes embedded in it, implementing a coarse-grained (CG) model of the molecules using rigid structures and Dissipative Particules Dynamics (DPD) as motion equation.http://sf.net/projects/mito-mas-m/Mon, 30 Jul 2007 00:00:00 GMThttp://sf.net/projects/nodes4knime/The Nodes4KNIME project is an open source initiative to develop independant nodes for use with the KNIME datamining and workflow project. See http://www.knime.org/ For more information see the project wiki http://nodes4knime.wiki.sourceforge.net/http://sf.net/projects/nodes4knime/Mon, 23 Jul 2007 00:00:00 GMThttp://sf.net/projects/bionlp-corpora/BioNLP-Corpora is a repository of biomedically and linguistically annotated corpora and biomedical data sources. There are many resources available in separate packages in this project.http://sf.net/projects/bionlp-corpora/Tue, 17 Jul 2007 00:00:00 GMThttp://sf.net/projects/rdfa-chem/Userscripts for chemical RDFa semantics using the Operator (>0.8) add-on for Firefox/http://sf.net/projects/rdfa-chem/Mon, 02 Jul 2007 00:00:00 GMThttp://sf.net/projects/gbr6/An analytical generalized Born model to calculate electrostatic solvation energy that accurately reproduces the linearized Poisson-Boltzmann equation. More about this method is explained in J. Phys. Chem. B, 111, 3055-3061 (2007).http://sf.net/projects/gbr6/Mon, 25 Jun 2007 00:00:00 GMThttp://sf.net/projects/qlaue/Simulation of back reflection Laue diffraction images.http://sf.net/projects/qlaue/Mon, 11 Jun 2007 00:00:00 GMThttp://sf.net/projects/brennermd/BrennerMD is a public domain Fortran molecular dynamics program by Donald Brenner and other people. This project is to maintain the original source code and to build a Python interface on top of it.http://sf.net/projects/brennermd/Fri, 08 Jun 2007 00:00:00 GMThttp://sf.net/projects/chemdatabase/This is a Chemistry Database which allows the user to select specially formatted text files and display them in tabbed list boxes. The program then allows you to sort, edit, add, and delete records from the lists.http://sf.net/projects/chemdatabase/Tue, 05 Jun 2007 00:00:00 GMThttp://sf.net/projects/moleculemaster/MoleculeMaster is a plugin-oriented expandable architecture for both small and large molecule study and manipulation. It includes molecule editors, 3D viewers, the ability to run molecular mechanics, dynamics and docking models, among other things.http://sf.net/projects/moleculemaster/Tue, 05 Jun 2007 00:00:00 GMThttp://sf.net/projects/binviz/BINViz(Bidirectional Interactive Network Visualization) is a JavaScript library for network and graph visualization. The goal of this tool is to provide a better way to visualize complex graphical models and the underlying data in a web-based environmenthttp://sf.net/projects/binviz/Tue, 05 Jun 2007 00:00:00 GMThttp://sf.net/projects/ezdata/ezData is a cross-platform data processing program designed for data acquired from chromatography, CE, spectroscopy, and other data in need of peak-definement, data comparison, graphic viewing, and formated data report. (based on wxWidgets)http://sf.net/projects/ezdata/Thu, 31 May 2007 00:00:00 GMT